Contents
D_STAT_FUNC corrects the D-scores using a fudge factor.
D = D_STAT_FUNC (CL) applies a statistical test on the data divided in classes following a CL design, and corrects the denominator of the result by a fudge factor, resulting in SAM D-scores.
[D, D_BAR] = D_STAT_FUNC (CL) returns the D_BAR scores.
[D, D_BAR, P_VALUE] = D_STAT_FUNC (CL) returns the P_VALUEs of the statistical test.
[D, D_BAR, P_VALUE, VEC_FALSE] = D_STAT_FUNC (CL) returns cut-off VEC_FALSE from which false called observations will be found.
[D, D_BAR, P_VALUE, VEC_FALSE, FOLD_OUT] = D_STAT_FUNC (CL) returns the fold changes FOLD_OUT .
[D, D_BAR, P_VALUE, VEC_FALSE, FOLD_OUT, S] = D_STAT_FUNC (CL) returns the denominator S of the statistical test.
VALUE D : observed expression scores. D_BAR : expected expression scores. P_VALUE : p-values of the statistical test. VEC_FALSE : limens helping to choose D scores of expressed observations. FOLD_OUT : fold changes. S : denominator of the statistical test.